Scientific Volume Imaging

Pioneer in image Deconvolution, Visualization and Analysis

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New features in Huygens 3.5

Patch 3.5.1-p2

Fixed a bug reading some TIFF series, specially in the Batch Processor.
Fixed a bug in the Batch Processor that made it fail in certain installations: tasks were not being processed.
The File Series Tool runs faster now, noticeably when loading many files over the network.
Fixed some conflicts in the Object Analyzer and Surface Renderer when changing the degree of transparency, for example when combining it with a MIP or a slicer.
Fixed a backwards compatibility problem with the -def option of the #setp# command in scripting.

Patch 3.5.0p4

Bugs fixed in the Object Analyzer, deconvolution with many bricks, and others.

Patch 3.5.0p3

Bug fixed in estimating the background.

Patch 3.5.0p2

Some bugs fixed.

Patch 3.5.0-p1

This patched version corrects some bugs in the first release, like template exporting from Essential and STK file reading in Huygens Core.

Release 3.5

This is what you will find in the Huygens Suite release with Huygens Compute Engine version 3.5, to be released in the last quarter of 2009.

A brand new option called 'Object Stabilizer' to measure and correct for cell motion, thermal drift, shaking, and other types of movement.
Optical parameters now also include the coverslip position and the imaging direction for improved handling of spherical aberration, in turn leading to improved deconvolution results.
A full HDF5 file format reader and writer:
- HDF5 is an open standard. The construction of Huygens HDF5 images is kept as simple as possible, making it trivial to open them in Matlab, Mathematica, or existing open source HDF viewers.
- Stores more microscopic parameters.
- Lossless compressed image data, resulting in significantly smaller files.
Visualization templates for all our 3D renderers.
Improvements on the Batch Processor.
Improvements in the SFP renderer.
The Colocalization Analyzer can export the 3D colocalization map as an image, so that it can be taken into the Object Analyzer for more complex analysis.
The Object Analyzer contains many new features, like:
- Interactive thresholds setting on the channel histogram
- Analysis history that you can save.
- Undo mechanism.
- And many others...

Fixes

Fixes in reading Leica LIF files.
OIF reader updated
Fixes in reading 16 bit LSM files
Many other bug fixes.

What you need to know

Users familiar with previous versions of Huygens are advised to read a short summary of changes at Changes In Huygens_3.5*.

More details

For a more detailed list of new features, see Whats New*.

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